J4_5VPP_005

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_005 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0914

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5VPP|1|RA|C|297
5VPP|1|RA|G|298
5VPP|1|RA|A|299
5VPP|1|RA|A|300
5VPP|1|RA|G|301
*
5VPP|1|RA|C|316
5VPP|1|RA|G|317
5VPP|1|RA|C|318
5VPP|1|RA|C|319
*
5VPP|1|RA|G|323
5VPP|1|RA|A|324
5VPP|1|RA|G|325
*
5VPP|1|RA|C|337
5VPP|1|RA|G|338
5VPP|1|RA|U|339
5VPP|1|RA|A|340
5VPP|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24