J4_5VPP_006

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

5VPP|1|RA|G|1271, 5VPP|1|RA|A|1272, 5VPP|1|RA|U|1273, 5VPP|1|RA|A|1274, 5VPP|1|RA|C|1646, 5VPP|1|RA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_006 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.117

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5VPP|1|RA|C|1270
5VPP|1|RA|G|1271
5VPP|1|RA|A|1272
5VPP|1|RA|U|1273
5VPP|1|RA|A|1274
5VPP|1|RA|A|1275
5VPP|1|RA|A|1276
*
5VPP|1|RA|U|1294
5VPP|1|RA|C|1295
*
5VPP|1|RA|G|1645
5VPP|1|RA|C|1646
5VPP|1|RA|G|1647
5VPP|1|RA|C|1648
*
5VPP|1|RA|G|2009
5VPP|1|RA|G|2010

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22