J4_5VPP_014

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5VPP|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_014 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1105

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5VPP|1|XA|G|115
5VPP|1|XA|A|116
5VPP|1|XA|G|117
5VPP|1|XA|U|118
5VPP|1|XA|A|119
5VPP|1|XA|A|120
5VPP|1|XA|C|121
5VPP|1|XA|G|122
*
5VPP|1|XA|U|239
5VPP|1|XA|C|240
*
5VPP|1|XA|G|286
5VPP|1|XA|U|287
5VPP|1|XA|A|288
5VPP|1|XA|G|289
*
5VPP|1|XA|C|311
5VPP|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17