J4_5VPP_017

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5VPP|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPP_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.117

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5VPP|1|YA|C|268
5VPP|1|YA|U|269
*
5VPP|1|YA|G|370
5VPP|1|YA|A|371
5VPP|1|YA|G|372
5VPP|1|YA|U|373
5VPP|1|YA|A|374
5VPP|1|YA|C|375
*
5VPP|1|YA|G|399
5VPP|1|YA|G|400
5VPP|1|YA|A|401
5VPP|1|YA|A|402
5VPP|1|YA|U|403
5VPP|1|YA|C|404
5VPP|1|YA|U|405
5VPP|1|YA|G|406
*
5VPP|1|YA|U|421
5VPP|1|YA|A|422
5VPP|1|YA|A|423
5VPP|1|YA|G|424

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9