Loop J4_5VYC

3D structure

PDB id: 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
Experimental method: X-RAY DIFFRACTION
Resolution: 6 Å

Loop

Sequence: CUUGU*AAAUAACAAUA*UAAUUGGAAUGAGUCCACUUUAAAUCCUUCCGCGAGGAUCCAU*AUAG
Length: 63 nucleotides
Bulged bases: 5VYC|1|i6|A|555, 5VYC|1|i6|A|590, 5VYC|1|i6|C|592, 5VYC|1|i6|C|593
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5VYC|1|i6|C|30
5VYC|1|i6|U|31
5VYC|1|i6|U|32
5VYC|1|i6|G|33
5VYC|1|i6|U|34
*
5VYC|1|i6|A|521
5VYC|1|i6|A|522
5VYC|1|i6|A|523
5VYC|1|i6|U|524
5VYC|1|i6|A|525
5VYC|1|i6|A|526
5VYC|1|i6|C|527
5VYC|1|i6|A|528
5VYC|1|i6|A|529
5VYC|1|i6|U|530
5VYC|1|i6|A|531
*
5VYC|1|i6|U|553
5VYC|1|i6|A|554
5VYC|1|i6|A|555
5VYC|1|i6|U|556
5VYC|1|i6|U|557
5VYC|1|i6|G|558
5VYC|1|i6|G|559
5VYC|1|i6|A|560
5VYC|1|i6|A|561
5VYC|1|i6|U|562
5VYC|1|i6|G|563
5VYC|1|i6|A|564
5VYC|1|i6|G|565
5VYC|1|i6|U|566
5VYC|1|i6|C|567
5VYC|1|i6|C|568
5VYC|1|i6|A|569
5VYC|1|i6|C|570
5VYC|1|i6|U|571
5VYC|1|i6|U|572
5VYC|1|i6|U|573
5VYC|1|i6|A|574
5VYC|1|i6|A|575
5VYC|1|i6|A|576
5VYC|1|i6|U|577
5VYC|1|i6|C|578
5VYC|1|i6|C|579
5VYC|1|i6|U|580
5VYC|1|i6|U|581
5VYC|1|i6|C|582
5VYC|1|i6|C|583
5VYC|1|i6|G|584
5VYC|1|i6|C|585
5VYC|1|i6|G|586
5VYC|1|i6|A|587
5VYC|1|i6|G|588
5VYC|1|i6|G|589
5VYC|1|i6|A|590
5VYC|1|i6|U|591
5VYC|1|i6|C|592
5VYC|1|i6|C|593
5VYC|1|i6|A|594
5VYC|1|i6|U|595
*
5VYC|1|i6|A|641
5VYC|1|i6|U|642
5VYC|1|i6|A|643
5VYC|1|i6|G|644

Current chains

Chain i6: Human 18S ribosomal RNA

Nearby chains

Chain J6: 40S ribosomal protein S9
Chain X6: 40S ribosomal protein S23
Chain Y6: 40S ribosomal protein S24
Chain e6: 40S ribosomal protein S30

J4_5VYC_021