J4_5VYC_022
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAUCCAAGGAAGGCAG
- Length
- 33 nucleotides
- Bulged bases
- 5VYC|1|i6|A|92, 5VYC|1|i6|A|464, 5VYC|1|i6|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i6|C|53
5VYC|1|i6|A|54
5VYC|1|i6|U|55
5VYC|1|i6|G|56
*
5VYC|1|i6|C|89
5VYC|1|i6|G|90
5VYC|1|i6|A|91
5VYC|1|i6|A|92
5VYC|1|i6|U|93
5VYC|1|i6|G|94
5VYC|1|i6|G|95
5VYC|1|i6|C|96
*
5VYC|1|i6|G|434
5VYC|1|i6|A|435
5VYC|1|i6|G|436
*
5VYC|1|i6|C|457
5VYC|1|i6|A|458
5VYC|1|i6|C|459
5VYC|1|i6|A|460
5VYC|1|i6|U|461
5VYC|1|i6|C|462
5VYC|1|i6|C|463
5VYC|1|i6|A|464
5VYC|1|i6|A|465
5VYC|1|i6|G|466
5VYC|1|i6|G|467
5VYC|1|i6|A|468
5VYC|1|i6|A|469
5VYC|1|i6|G|470
5VYC|1|i6|G|471
5VYC|1|i6|C|472
5VYC|1|i6|A|473
5VYC|1|i6|G|474
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain E6
- 40S ribosomal protein S4, X isoform
- Chain G6
- 40S ribosomal protein S6
- Chain I6
- 40S ribosomal protein S8
- Chain J6
- 40S ribosomal protein S9
- Chain Y6
- 40S ribosomal protein S24
Coloring options: