J4_5VYC_023
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5VYC|1|i6|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5VYC_023 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1484
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5VYC|1|i6|C|98
5VYC|1|i6|A|99
5VYC|1|i6|U|100
5VYC|1|i6|U|101
5VYC|1|i6|A|102
5VYC|1|i6|A|103
5VYC|1|i6|A|104
5VYC|1|i6|U|105
5VYC|1|i6|C|106
*
5VYC|1|i6|G|355
5VYC|1|i6|C|356
5VYC|1|i6|C|357
*
5VYC|1|i6|G|405
5VYC|1|i6|U|406
5VYC|1|i6|G|407
5VYC|1|i6|A|408
5VYC|1|i6|C|409
*
5VYC|1|i6|G|431
5VYC|1|i6|G|432
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain E6
- 40S ribosomal protein S4, X isoform
- Chain I6
- 40S ribosomal protein S8
- Chain L6
- 40S ribosomal protein S11
- Chain X6
- 40S ribosomal protein S23
Coloring options: