J4_5W4K_017

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5W4K|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5W4K_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0635

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5W4K|1|2A|C|268
5W4K|1|2A|U|269
*
5W4K|1|2A|G|370
5W4K|1|2A|A|371
5W4K|1|2A|G|372
5W4K|1|2A|U|373
5W4K|1|2A|A|374
5W4K|1|2A|C|375
*
5W4K|1|2A|G|399
5W4K|1|2A|G|400
5W4K|1|2A|A|401
5W4K|1|2A|A|402
5W4K|1|2A|U|403
5W4K|1|2A|C|404
5W4K|1|2A|U|405
5W4K|1|2A|G|406
*
5W4K|1|2A|U|421
5W4K|1|2A|A|422
5W4K|1|2A|A|423
5W4K|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9