3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
5W4K|1|2a|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5W4K_029 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0528
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

5W4K|1|2a|G|575
5W4K|1|2a|G|576
5W4K|1|2a|G|577
*
5W4K|1|2a|C|764
5W4K|1|2a|G|765
5W4K|1|2a|A|766
5W4K|1|2a|A|767
5W4K|1|2a|A|768
5W4K|1|2a|G|769
*
5W4K|1|2a|C|810
5W4K|1|2a|C|811
5W4K|1|2a|C|812
5W4K|1|2a|U|813
5W4K|1|2a|A|814
5W4K|1|2a|A|815
5W4K|1|2a|A|816
5W4K|1|2a|C|817
5W4K|1|2a|G|818
5W4K|1|2a|A|819
5W4K|1|2a|U|820
5W4K|1|2a|G|821
*
5W4K|1|2a|C|879
5W4K|1|2a|C|880

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2h
30S ribosomal protein S8
Chain 2l
30S ribosomal protein S12
Chain 2o
30S ribosomal protein S15
Chain 2q
30S ribosomal protein S17

Coloring options:


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