J4_5WDT_011

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5WDT|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WDT_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3172

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WDT|1|a|G|115
5WDT|1|a|A|116
5WDT|1|a|G|117
5WDT|1|a|U|118
5WDT|1|a|A|119
5WDT|1|a|A|120
5WDT|1|a|U|121
5WDT|1|a|G|122
*
5WDT|1|a|U|239
5WDT|1|a|G|240
*
5WDT|1|a|C|286
5WDT|1|a|U|287
5WDT|1|a|A|288
5WDT|1|a|G|289
*
5WDT|1|a|C|311
5WDT|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17