J4_5WDT_012

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5WDT|1|a|C|183, 5WDT|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WDT_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2009

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5WDT|1|a|G|142
5WDT|1|a|A|143
5WDT|1|a|G|144
*
5WDT|1|a|C|178
5WDT|1|a|A|179
5WDT|1|a|U|180
5WDT|1|a|A|181
5WDT|1|a|A|182
5WDT|1|a|C|183
5WDT|1|a|G|184
*
5WDT|1|a|C|193
5WDT|1|a|C|194
5WDT|1|a|A|195
5WDT|1|a|A|196
5WDT|1|a|A|197
5WDT|1|a|G|198
*
5WDT|1|a|U|219
5WDT|1|a|G|220
5WDT|1|a|C|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20