J4_5WE4_001

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5WE4|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WE4_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2102

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5WE4|1|A|C|268
5WE4|1|A|C|269
*
5WE4|1|A|G|370
5WE4|1|A|A|371
5WE4|1|A|G|372
5WE4|1|A|U|373
5WE4|1|A|A|374
5WE4|1|A|G|375
*
5WE4|1|A|U|399
5WE4|1|A|G|400
5WE4|1|A|A|401
5WE4|1|A|A|402
5WE4|1|A|U|403
5WE4|1|A|A|404
5WE4|1|A|U|405
5WE4|1|A|G|406
*
5WE4|1|A|C|421
5WE4|1|A|A|422
5WE4|1|A|A|423
5WE4|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28