J4_5WE4_011

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5WE4|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WE4_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3126

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WE4|1|a|G|115
5WE4|1|a|A|116
5WE4|1|a|G|117
5WE4|1|a|U|118
5WE4|1|a|A|119
5WE4|1|a|A|120
5WE4|1|a|U|121
5WE4|1|a|G|122
*
5WE4|1|a|U|239
5WE4|1|a|G|240
*
5WE4|1|a|C|286
5WE4|1|a|U|287
5WE4|1|a|A|288
5WE4|1|a|G|289
*
5WE4|1|a|C|311
5WE4|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17