3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
A(4SU)AG*CAG*CGU(7MG)UCC*GU
Length
16 nucleotides
Bulged bases
5WE4|1|y|4SU|8, 5WE4|1|y|U|47, 5WE4|1|y|C|48
QA status
Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5WE4_016 not in the Motif Atlas
Homologous match to J4_5WT1_002
Geometric discrepancy: 0.2435
The information below is about J4_5WT1_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_40477.1
Basepair signature
cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
Number of instances in this motif group
4

Unit IDs

5WE4|1|y|A|7
5WE4|1|y|4SU|8
5WE4|1|y|A|9
5WE4|1|y|G|10
*
5WE4|1|y|C|25
5WE4|1|y|A|26
5WE4|1|y|G|27
*
5WE4|1|y|C|43
5WE4|1|y|G|44
5WE4|1|y|U|45
5WE4|1|y|7MG|46
5WE4|1|y|U|47
5WE4|1|y|C|48
5WE4|1|y|C|49
*
5WE4|1|y|G|65
5WE4|1|y|U|66

Current chains

Chain y
Phe-tRNA-Phe

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain l
30S ribosomal protein S12
Chain z
Elongation factor Tu 2

Coloring options:


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