J4_5WE6_001

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5WE6|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WE6_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1411

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5WE6|1|A|C|268
5WE6|1|A|C|269
*
5WE6|1|A|G|370
5WE6|1|A|A|371
5WE6|1|A|G|372
5WE6|1|A|U|373
5WE6|1|A|A|374
5WE6|1|A|G|375
*
5WE6|1|A|U|399
5WE6|1|A|G|400
5WE6|1|A|A|401
5WE6|1|A|A|402
5WE6|1|A|U|403
5WE6|1|A|A|404
5WE6|1|A|U|405
5WE6|1|A|G|406
*
5WE6|1|A|C|421
5WE6|1|A|A|422
5WE6|1|A|A|423
5WE6|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28