J4_5WF0_001

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5WF0|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WF0_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1981

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5WF0|1|A|C|268
5WF0|1|A|C|269
*
5WF0|1|A|G|370
5WF0|1|A|A|371
5WF0|1|A|G|372
5WF0|1|A|U|373
5WF0|1|A|A|374
5WF0|1|A|G|375
*
5WF0|1|A|U|399
5WF0|1|A|G|400
5WF0|1|A|A|401
5WF0|1|A|A|402
5WF0|1|A|U|403
5WF0|1|A|A|404
5WF0|1|A|U|405
5WF0|1|A|G|406
*
5WF0|1|A|C|421
5WF0|1|A|A|422
5WF0|1|A|A|423
5WF0|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28