J4_5WF0_011

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5WF0|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WF0_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3185

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WF0|1|a|G|115
5WF0|1|a|A|116
5WF0|1|a|G|117
5WF0|1|a|U|118
5WF0|1|a|A|119
5WF0|1|a|A|120
5WF0|1|a|U|121
5WF0|1|a|G|122
*
5WF0|1|a|U|239
5WF0|1|a|G|240
*
5WF0|1|a|C|286
5WF0|1|a|U|287
5WF0|1|a|A|288
5WF0|1|a|G|289
*
5WF0|1|a|C|311
5WF0|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17