J4_5WF0_016

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

A(4SU)AG*CA*U(7MG)UCC*GU

Length

13 nucleotides

Bulged bases

5WF0|1|y|4SU|8, 5WF0|1|y|U|47, 5WF0|1|y|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WF0_016 not in the Motif Atlas

Homologous match to J4_5WT1_001

Geometric discrepancy: 0.282

The information below is about J4_5WT1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

5WF0|1|y|A|7
5WF0|1|y|4SU|8
5WF0|1|y|A|9
5WF0|1|y|G|10
*
5WF0|1|y|C|25
5WF0|1|y|A|26
*
5WF0|1|y|U|45
5WF0|1|y|7MG|46
5WF0|1|y|U|47
5WF0|1|y|C|48
5WF0|1|y|C|49
*
5WF0|1|y|G|65
5WF0|1|y|U|66

Current chains

Chain y

Phe-tRNA-Phe

Nearby chains

Chain l

30S ribosomal protein S12

Chain z

Elongation factor Tu 2