J4_5WFS_001

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5WFS|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WFS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1375

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5WFS|1|A|C|268
5WFS|1|A|C|269
*
5WFS|1|A|G|370
5WFS|1|A|A|371
5WFS|1|A|G|372
5WFS|1|A|U|373
5WFS|1|A|A|374
5WFS|1|A|G|375
*
5WFS|1|A|U|399
5WFS|1|A|G|400
5WFS|1|A|A|401
5WFS|1|A|A|402
5WFS|1|A|U|403
5WFS|1|A|A|404
5WFS|1|A|U|405
5WFS|1|A|G|406
*
5WFS|1|A|C|421
5WFS|1|A|A|422
5WFS|1|A|A|423
5WFS|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28