J4_5WFS_011

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5WFS|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WFS_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2616

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WFS|1|a|G|115
5WFS|1|a|A|116
5WFS|1|a|G|117
5WFS|1|a|U|118
5WFS|1|a|A|119
5WFS|1|a|A|120
5WFS|1|a|U|121
5WFS|1|a|G|122
*
5WFS|1|a|U|239
5WFS|1|a|G|240
*
5WFS|1|a|C|286
5WFS|1|a|U|287
5WFS|1|a|A|288
5WFS|1|a|G|289
*
5WFS|1|a|C|311
5WFS|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17