J4_5WFS_017
3D structure
- PDB id
- 5WFS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5WFS|1|y|4SU|8, 5WFS|1|y|U|47, 5WFS|1|y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5WFS_017 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.2324
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5WFS|1|y|A|7
5WFS|1|y|4SU|8
5WFS|1|y|A|9
5WFS|1|y|G|10
*
5WFS|1|y|C|25
5WFS|1|y|A|26
5WFS|1|y|G|27
*
5WFS|1|y|C|43
5WFS|1|y|G|44
5WFS|1|y|U|45
5WFS|1|y|7MG|46
5WFS|1|y|U|47
5WFS|1|y|C|48
5WFS|1|y|C|49
*
5WFS|1|y|G|65
5WFS|1|y|U|66
Current chains
- Chain y
- Phe-tRNA-Phe
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain z
- Elongation factor Tu 2
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