J4_5WIS_017

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5WIS|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIS_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0752

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5WIS|1|2A|C|268
5WIS|1|2A|U|269
*
5WIS|1|2A|G|370
5WIS|1|2A|A|371
5WIS|1|2A|G|372
5WIS|1|2A|U|373
5WIS|1|2A|A|374
5WIS|1|2A|C|375
*
5WIS|1|2A|G|399
5WIS|1|2A|G|400
5WIS|1|2A|A|401
5WIS|1|2A|A|402
5WIS|1|2A|U|403
5WIS|1|2A|C|404
5WIS|1|2A|U|405
5WIS|1|2A|G|406
*
5WIS|1|2A|U|421
5WIS|1|2A|A|422
5WIS|1|2A|A|423
5WIS|1|2A|G|424

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9