J4_5WIT_001

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5WIT|1|1A|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WIT_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.077

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5WIT|1|1A|C|257
5WIT|1|1A|U|258
*
5WIT|1|1A|G|397
5WIT|1|1A|A|398
5WIT|1|1A|G|399
5WIT|1|1A|U|400
5WIT|1|1A|A|401
5WIT|1|1A|C|402
*
5WIT|1|1A|G|426
5WIT|1|1A|G|427
5WIT|1|1A|A|428
5WIT|1|1A|A|429
5WIT|1|1A|U|430
5WIT|1|1A|C|431
5WIT|1|1A|U|432
5WIT|1|1A|G|433
*
5WIT|1|1A|U|448
5WIT|1|1A|A|449
5WIT|1|1A|A|450
5WIT|1|1A|G|451

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9