3D structure

PDB id
5WNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
5WNQ|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5WNQ_003 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.048
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

5WNQ|1|A|G|575
5WNQ|1|A|G|576
5WNQ|1|A|G|577
*
5WNQ|1|A|C|764
5WNQ|1|A|G|765
5WNQ|1|A|A|766
5WNQ|1|A|A|767
5WNQ|1|A|A|768
5WNQ|1|A|G|769
*
5WNQ|1|A|C|810
5WNQ|1|A|C|811
5WNQ|1|A|C|812
5WNQ|1|A|U|813
5WNQ|1|A|A|814
5WNQ|1|A|A|815
5WNQ|1|A|A|816
5WNQ|1|A|C|817
5WNQ|1|A|G|818
5WNQ|1|A|A|819
5WNQ|1|A|U|820
5WNQ|1|A|G|821
*
5WNQ|1|A|C|879
5WNQ|1|A|C|880

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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