J4_5WT3_002

3D structure

PDB id

5WT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUAG*CAC*GGUGUCG*CC

Length

16 nucleotides

Bulged bases

5WT3|1|C|U|8, 5WT3|1|C|U|47, 5WT3|1|C|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5WT3_002 not in the Motif Atlas

Homologous match to J4_5WT1_002

Geometric discrepancy: 0.0699

The information below is about J4_5WT1_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_40477.2

Basepair signature

cWW-F-cWW-F-cWW-F-F-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5WT3|1|C|G|7
5WT3|1|C|U|8
5WT3|1|C|A|9
5WT3|1|C|G|10
*
5WT3|1|C|C|25
5WT3|1|C|A|26
5WT3|1|C|C|27
*
5WT3|1|C|G|43
5WT3|1|C|G|44
5WT3|1|C|U|45
5WT3|1|C|G|46
5WT3|1|C|U|47
5WT3|1|C|C|48
5WT3|1|C|G|49
*
5WT3|1|C|C|65
5WT3|1|C|C|66

Current chains

Chain C

RNA (73-MER)

Nearby chains

Chain A

tRNA (guanine(37)-N1)-methyltransferase Trm5a