J4_5WYJ_001

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

UCAUUAAAUC*GCC*GUAAC*GGA

Length

21 nucleotides

Bulged bases

5WYJ|1|SA|A|359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|SA|U|98
5WYJ|1|SA|C|99
5WYJ|1|SA|A|100
5WYJ|1|SA|U|101
5WYJ|1|SA|U|102
5WYJ|1|SA|A|103
5WYJ|1|SA|A|104
5WYJ|1|SA|A|105
5WYJ|1|SA|U|106
5WYJ|1|SA|C|107
*
5WYJ|1|SA|G|307
5WYJ|1|SA|C|308
5WYJ|1|SA|C|309
*
5WYJ|1|SA|G|357
5WYJ|1|SA|U|358
5WYJ|1|SA|A|359
5WYJ|1|SA|A|360
5WYJ|1|SA|C|361
*
5WYJ|1|SA|G|383
5WYJ|1|SA|G|384
5WYJ|1|SA|A|385

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A