J4_5WYK_001

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCAUUAAAUC*GCC*GUAAC*GGA

Length

21 nucleotides

Bulged bases

5WYK|1|SA|A|105, 5WYK|1|SA|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|SA|U|98
5WYK|1|SA|C|99
5WYK|1|SA|A|100
5WYK|1|SA|U|101
5WYK|1|SA|U|102
5WYK|1|SA|A|103
5WYK|1|SA|A|104
5WYK|1|SA|A|105
5WYK|1|SA|U|106
5WYK|1|SA|C|107
*
5WYK|1|SA|G|307
5WYK|1|SA|C|308
5WYK|1|SA|C|309
*
5WYK|1|SA|G|357
5WYK|1|SA|U|358
5WYK|1|SA|A|359
5WYK|1|SA|A|360
5WYK|1|SA|C|361
*
5WYK|1|SA|G|383
5WYK|1|SA|G|384
5WYK|1|SA|A|385

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A