J4_5XYM_005

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

5XYM|1|A|G|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5XYM_005 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1027

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5XYM|1|A|U|1431
5XYM|1|A|C|1432
*
5XYM|1|A|G|1456
5XYM|1|A|G|1457
5XYM|1|A|U|1458
5XYM|1|A|G|1459
5XYM|1|A|A|1460
5XYM|1|A|G|1461
*
5XYM|1|A|C|1522
5XYM|1|A|C|1523
*
5XYM|1|A|G|1818
5XYM|1|A|C|1819
5XYM|1|A|C|1820
5XYM|1|A|C|1821
5XYM|1|A|G|1822
5XYM|1|A|U|1823
5XYM|1|A|A|1824

Current chains

Chain A

23S RNA

Nearby chains

Chain T

50S ribosomal protein L23