J4_5ZEB_005

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

5ZEB|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZEB_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1151

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5ZEB|1|A|U|1428
5ZEB|1|A|C|1429
*
5ZEB|1|A|G|1453
5ZEB|1|A|G|1454
5ZEB|1|A|U|1455
5ZEB|1|A|G|1456
5ZEB|1|A|A|1457
5ZEB|1|A|G|1458
*
5ZEB|1|A|C|1519
5ZEB|1|A|C|1520
*
5ZEB|1|A|G|1815
5ZEB|1|A|C|1816
5ZEB|1|A|C|1817
5ZEB|1|A|C|1818
5ZEB|1|A|G|1819
5ZEB|1|A|U|1820
5ZEB|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23