J4_5ZEP_003

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

5ZEP|1|A|G|1386, 5ZEP|1|A|U|1389, 5ZEP|1|A|A|1390, 5ZEP|1|A|U|1864, 5ZEP|1|A|A|1865

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZEP_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.4536

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5ZEP|1|A|C|1385
5ZEP|1|A|G|1386
5ZEP|1|A|A|1387
5ZEP|1|A|U|1388
5ZEP|1|A|U|1389
5ZEP|1|A|A|1390
5ZEP|1|A|G|1391
*
5ZEP|1|A|C|1409
5ZEP|1|A|C|1410
*
5ZEP|1|A|G|1863
5ZEP|1|A|U|1864
5ZEP|1|A|A|1865
5ZEP|1|A|C|1866
*
5ZEP|1|A|G|2233
5ZEP|1|A|G|2234

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain z

50S ribosomal protein L32