J4_5ZEP_010

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZEP_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1195

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5ZEP|1|A|A|2867
5ZEP|1|A|A|2868
5ZEP|1|A|C|2869
5ZEP|1|A|C|2870
*
5ZEP|1|A|G|2898
5ZEP|1|A|A|2899
5ZEP|1|A|C|2900
*
5ZEP|1|A|G|2955
5ZEP|1|A|G|2956
5ZEP|1|A|A|2957
5ZEP|1|A|C|2958
5ZEP|1|A|A|2959
*
5ZEP|1|A|U|2993
5ZEP|1|A|C|2994
5ZEP|1|A|U|2995

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain L

50S ribosomal protein L14