J4_5ZEP_012
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUU*AAUACAC*GGAAAG*CGG
- Length
- 19 nucleotides
- Bulged bases
- 5ZEP|1|a|C|179, 5ZEP|1|a|A|180
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ZEP_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.4388
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5ZEP|1|a|C|139
5ZEP|1|a|U|140
5ZEP|1|a|U|141
*
5ZEP|1|a|A|175
5ZEP|1|a|A|176
5ZEP|1|a|U|177
5ZEP|1|a|A|178
5ZEP|1|a|C|179
5ZEP|1|a|A|180
5ZEP|1|a|C|181
*
5ZEP|1|a|G|207
5ZEP|1|a|G|208
5ZEP|1|a|A|209
5ZEP|1|a|A|210
5ZEP|1|a|A|211
5ZEP|1|a|G|212
*
5ZEP|1|a|C|219
5ZEP|1|a|G|220
5ZEP|1|a|G|221
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain q
- 30S ribosomal protein S17
- Chain t
- 30S ribosomal protein S20
Coloring options: