J4_5ZET_004

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5ZET|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZET_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1199

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5ZET|1|A|G|1425
5ZET|1|A|G|1426
5ZET|1|A|U|1427
5ZET|1|A|U|1428
5ZET|1|A|C|1429
*
5ZET|1|A|G|1453
5ZET|1|A|G|1454
5ZET|1|A|U|1455
5ZET|1|A|G|1456
5ZET|1|A|A|1457
5ZET|1|A|G|1458
*
5ZET|1|A|C|1519
5ZET|1|A|C|1520
*
5ZET|1|A|G|1815
5ZET|1|A|C|1816
5ZET|1|A|C|1817
5ZET|1|A|C|1818
5ZET|1|A|G|1819
5ZET|1|A|U|1820
5ZET|1|A|A|1821
5ZET|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L23