J4_5ZET_007

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZET_007 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0891

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5ZET|1|A|G|1989
5ZET|1|A|A|1990
5ZET|1|A|C|1991
5ZET|1|A|U|1992
5ZET|1|A|G|1993
*
5ZET|1|A|C|2005
5ZET|1|A|A|2006
5ZET|1|A|C|2007
5ZET|1|A|A|2008
5ZET|1|A|G|2009
*
5ZET|1|A|U|2044
5ZET|1|A|G|2045
5ZET|1|A|A|2046
5ZET|1|A|C|2047
*
5ZET|1|A|G|2199
5ZET|1|A|U|2200
5ZET|1|A|A|2201
5ZET|1|A|A|2202
5ZET|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2