J4_5ZLU_020

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZLU_020 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.1854

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5ZLU|1|V|G|2643
5ZLU|1|V|G|2644
5ZLU|1|V|G|2645
5ZLU|1|V|C|2646
*
5ZLU|1|V|G|2674
5ZLU|1|V|A|2675
5ZLU|1|V|C|2676
*
5ZLU|1|V|G|2731
5ZLU|1|V|G|2732
5ZLU|1|V|A|2733
5ZLU|1|V|A|2734
5ZLU|1|V|G|2735
*
5ZLU|1|V|C|2769
5ZLU|1|V|G|2770
5ZLU|1|V|C|2771

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L3

Chain g

50S ribosomal protein L13

Chain h

50S ribosomal protein L14