J4_6B4V_016
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 6B4V|1|EB|A|572, 6B4V|1|EB|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6B4V|1|EB|C|569
6B4V|1|EB|G|570
6B4V|1|EB|U|571
6B4V|1|EB|A|572
6B4V|1|EB|A|573
6B4V|1|EB|A|574
6B4V|1|EB|G|575
6B4V|1|EB|G|576
6B4V|1|EB|G|577
*
6B4V|1|EB|C|764
6B4V|1|EB|G|765
6B4V|1|EB|A|766
6B4V|1|EB|A|767
6B4V|1|EB|A|768
6B4V|1|EB|G|769
*
6B4V|1|EB|C|810
6B4V|1|EB|C|811
6B4V|1|EB|C|812
6B4V|1|EB|U|813
6B4V|1|EB|A|814
6B4V|1|EB|A|815
6B4V|1|EB|A|816
6B4V|1|EB|C|817
6B4V|1|EB|G|818
6B4V|1|EB|A|819
6B4V|1|EB|U|820
6B4V|1|EB|G|821
*
6B4V|1|EB|C|879
6B4V|1|EB|C|880
6B4V|1|EB|G|881
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S15
- Chain DD
- 30S ribosomal protein S17
- Chain FB
- Large subunit ribosomal RNA; LSU rRNA
- Chain RC
- 30S ribosomal protein S5
- Chain UC
- 30S ribosomal protein S8
- Chain YC
- 30S ribosomal protein S12
Coloring options: