J4_6B4V_018

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

6B4V|1|FB|C|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6B4V_018 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4657

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6B4V|1|FB|C|601
6B4V|1|FB|G|602
6B4V|1|FB|A|603
6B4V|1|FB|G|604
*
6B4V|1|FB|C|624
6B4V|1|FB|G|625
6B4V|1|FB|U|626
6B4V|1|FB|A|627
6B4V|1|FB|G|628
*
6B4V|1|FB|C|635
6B4V|1|FB|G|636
6B4V|1|FB|A|637
6B4V|1|FB|G|638
*
6B4V|1|FB|C|650
6B4V|1|FB|G|651
6B4V|1|FB|U|652
6B4V|1|FB|C|653
6B4V|1|FB|U|654
6B4V|1|FB|A|655
6B4V|1|FB|G|656

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L35

Chain KB

50S ribosomal protein L4

Chain QB

50S ribosomal protein L15