J4_6B4V_022

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAGUUGG*UG*CCGCAGUGAACAGG*CGC

Length

28 nucleotides

Bulged bases

6B4V|1|FB|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|G|1674
6B4V|1|FB|C|1675
6B4V|1|FB|A|1676
6B4V|1|FB|A|1677
6B4V|1|FB|G|1678
6B4V|1|FB|U|1679
6B4V|1|FB|U|1680
6B4V|1|FB|G|1681
6B4V|1|FB|G|1682
*
6B4V|1|FB|U|1706
6B4V|1|FB|G|1707
*
6B4V|1|FB|C|1751
6B4V|1|FB|C|1752
6B4V|1|FB|G|1753
6B4V|1|FB|C|1754
6B4V|1|FB|A|1755
6B4V|1|FB|G|1756
6B4V|1|FB|U|1757
6B4V|1|FB|G|1758
6B4V|1|FB|A|1759
6B4V|1|FB|A|1760
6B4V|1|FB|C|1761
6B4V|1|FB|A|1762
6B4V|1|FB|G|1763
6B4V|1|FB|G|1764
*
6B4V|1|FB|C|1988
6B4V|1|FB|G|1989
6B4V|1|FB|C|1990

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain EB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L14

Chain UB

50S ribosomal protein L19