J4_6B4V_024

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGC*GCG*CCUAAGGUAG*CGAAAA

Length

23 nucleotides

Bulged bases

6B4V|1|FB|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|U|1833
6B4V|1|FB|U|1834
6B4V|1|FB|G|1835
6B4V|1|FB|C|1836
*
6B4V|1|FB|G|1904
6B4V|1|FB|C|1905
6B4V|1|FB|G|1906
*
6B4V|1|FB|C|1924
6B4V|1|FB|C|1925
6B4V|1|FB|U|1926
6B4V|1|FB|A|1927
6B4V|1|FB|A|1928
6B4V|1|FB|G|1929
6B4V|1|FB|G|1930
6B4V|1|FB|U|1931
6B4V|1|FB|A|1932
6B4V|1|FB|G|1933
*
6B4V|1|FB|C|1967
6B4V|1|FB|G|1968
6B4V|1|FB|A|1969
6B4V|1|FB|A|1970
6B4V|1|FB|A|1971
6B4V|1|FB|A|1972

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain EB

Small subunit ribosomal RNA; SSU rRNA

Chain IB

50S ribosomal protein L2

Chain MC

Transfer RNA; tRNA