J4_6B4V_026

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGGC*GAC*GGAAG*CGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|G|2642
6B4V|1|FB|G|2643
6B4V|1|FB|G|2644
6B4V|1|FB|G|2645
6B4V|1|FB|C|2646
*
6B4V|1|FB|G|2674
6B4V|1|FB|A|2675
6B4V|1|FB|C|2676
*
6B4V|1|FB|G|2731
6B4V|1|FB|G|2732
6B4V|1|FB|A|2733
6B4V|1|FB|A|2734
6B4V|1|FB|G|2735
*
6B4V|1|FB|C|2769
6B4V|1|FB|G|2770
6B4V|1|FB|C|2771
6B4V|1|FB|C|2772

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L3

Chain OB

50S ribosomal protein L13

Chain PB

50S ribosomal protein L14