J4_6B4V_032

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6B4V|1|FB|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6B4V_032 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1025

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6B4V|1|FB|G|1310
6B4V|1|FB|G|1311
6B4V|1|FB|U|1312
6B4V|1|FB|U|1313
6B4V|1|FB|C|1314
*
6B4V|1|FB|G|1338
6B4V|1|FB|G|1339
6B4V|1|FB|U|1340
6B4V|1|FB|U|1341
6B4V|1|FB|A|1342
6B4V|1|FB|G|1343
*
6B4V|1|FB|C|1404
6B4V|1|FB|U|1405
*
6B4V|1|FB|A|1597
6B4V|1|FB|C|1598
6B4V|1|FB|C|1599
6B4V|1|FB|C|1600
6B4V|1|FB|G|1601
6B4V|1|FB|U|1602
6B4V|1|FB|A|1603
6B4V|1|FB|C|1604

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IC

50S ribosomal protein L34

Chain YB

50S ribosomal protein L23