J4_6BOH_007

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6BOH|1|B|G|1271, 6BOH|1|B|A|1272, 6BOH|1|B|U|1273, 6BOH|1|B|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_007 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0708

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|B|C|1270
6BOH|1|B|G|1271
6BOH|1|B|A|1272
6BOH|1|B|U|1273
6BOH|1|B|A|1274
6BOH|1|B|A|1275
6BOH|1|B|A|1276
*
6BOH|1|B|U|1294
6BOH|1|B|C|1295
*
6BOH|1|B|G|1645
6BOH|1|B|C|1646
6BOH|1|B|G|1647
6BOH|1|B|C|1648
*
6BOH|1|B|G|2009
6BOH|1|B|G|2010

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain CA

50S ribosomal protein L32

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22