J4_6BOH_008

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6BOH|1|B|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.081

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BOH|1|B|G|1310
6BOH|1|B|G|1311
6BOH|1|B|U|1312
6BOH|1|B|U|1313
6BOH|1|B|C|1314
*
6BOH|1|B|G|1338
6BOH|1|B|G|1339
6BOH|1|B|U|1340
6BOH|1|B|U|1341
6BOH|1|B|A|1342
6BOH|1|B|G|1343
*
6BOH|1|B|C|1404
6BOH|1|B|U|1405
*
6BOH|1|B|A|1597
6BOH|1|B|C|1598
6BOH|1|B|C|1599
6BOH|1|B|C|1600
6BOH|1|B|G|1601
6BOH|1|B|U|1602
6BOH|1|B|A|1603
6BOH|1|B|C|1604

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain EA

50S ribosomal protein L34

Chain U

50S ribosomal protein L23