J4_6BOH_011

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0775

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|B|G|1772
6BOH|1|B|A|1773
6BOH|1|B|C|1774
6BOH|1|B|U|1775
6BOH|1|B|G|1776
*
6BOH|1|B|C|1788
6BOH|1|B|A|1789
6BOH|1|B|C|1790
6BOH|1|B|A|1791
6BOH|1|B|G|1792
*
6BOH|1|B|C|1827
6BOH|1|B|G|1828
6BOH|1|B|A|1829
6BOH|1|B|C|1830
*
6BOH|1|B|G|1975
6BOH|1|B|U|1976
6BOH|1|B|A|1977
6BOH|1|B|A|1978
6BOH|1|B|C|1979

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain E

50S ribosomal protein L2