J4_6BOH_020

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_020 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1005

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|GB|C|297
6BOH|1|GB|G|298
6BOH|1|GB|A|299
6BOH|1|GB|A|300
6BOH|1|GB|G|301
*
6BOH|1|GB|C|316
6BOH|1|GB|G|317
6BOH|1|GB|C|318
6BOH|1|GB|C|319
*
6BOH|1|GB|G|323
6BOH|1|GB|A|324
6BOH|1|GB|G|325
*
6BOH|1|GB|C|337
6BOH|1|GB|G|338
6BOH|1|GB|U|339
6BOH|1|GB|A|340
6BOH|1|GB|G|341

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain LB

50S ribosomal protein L4