J4_6BOH_027

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6BOH|1|GB|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_027 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0718

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6BOH|1|GB|U|1833
6BOH|1|GB|U|1834
6BOH|1|GB|G|1835
*
6BOH|1|GB|C|1905
6BOH|1|GB|G|1906
*
6BOH|1|GB|C|1924
6BOH|1|GB|C|1925
6BOH|1|GB|U|1926
6BOH|1|GB|A|1927
6BOH|1|GB|A|1928
6BOH|1|GB|G|1929
6BOH|1|GB|G|1930
6BOH|1|GB|U|1931
6BOH|1|GB|A|1932
6BOH|1|GB|G|1933
*
6BOH|1|GB|C|1967
6BOH|1|GB|G|1968
6BOH|1|GB|A|1969
6BOH|1|GB|A|1970
6BOH|1|GB|A|1971
6BOH|1|GB|A|1972

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2

Chain NC

Transfer RNA; tRNA