J4_6BOK_004
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 6BOK|1|B|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BOK_004 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.0681
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6BOK|1|B|C|268
6BOK|1|B|U|269
*
6BOK|1|B|G|370
6BOK|1|B|A|371
6BOK|1|B|G|372
6BOK|1|B|U|373
6BOK|1|B|A|374
6BOK|1|B|C|375
*
6BOK|1|B|G|399
6BOK|1|B|G|400
6BOK|1|B|A|401
6BOK|1|B|A|402
6BOK|1|B|U|403
6BOK|1|B|C|404
6BOK|1|B|U|405
6BOK|1|B|G|406
*
6BOK|1|B|U|421
6BOK|1|B|A|422
6BOK|1|B|A|423
6BOK|1|B|G|424
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L9
- Chain Y
- 50S ribosomal protein L28
Coloring options: