J4_6BOK_008
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6BOK|1|B|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BOK_008 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.0789
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6BOK|1|B|G|1310
6BOK|1|B|G|1311
6BOK|1|B|U|1312
6BOK|1|B|U|1313
6BOK|1|B|C|1314
*
6BOK|1|B|G|1338
6BOK|1|B|G|1339
6BOK|1|B|U|1340
6BOK|1|B|U|1341
6BOK|1|B|A|1342
6BOK|1|B|G|1343
*
6BOK|1|B|C|1404
6BOK|1|B|U|1405
*
6BOK|1|B|A|1597
6BOK|1|B|C|1598
6BOK|1|B|C|1599
6BOK|1|B|C|1600
6BOK|1|B|G|1601
6BOK|1|B|U|1602
6BOK|1|B|A|1603
6BOK|1|B|C|1604
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain EA
- 50S ribosomal protein L34
- Chain U
- 50S ribosomal protein L23
Coloring options: