J4_6BOK_029

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOK_029 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0603

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6BOK|1|EB|G|2643
6BOK|1|EB|G|2644
6BOK|1|EB|G|2645
6BOK|1|EB|C|2646
*
6BOK|1|EB|G|2674
6BOK|1|EB|A|2675
6BOK|1|EB|C|2676
*
6BOK|1|EB|G|2731
6BOK|1|EB|G|2732
6BOK|1|EB|A|2733
6BOK|1|EB|A|2734
6BOK|1|EB|G|2735
*
6BOK|1|EB|C|2769
6BOK|1|EB|G|2770
6BOK|1|EB|C|2771

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain IB

50S ribosomal protein L3

Chain NB

50S ribosomal protein L13

Chain OB

50S ribosomal protein L14