J4_6BOK_035

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6BOK|1|EB|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOK_035 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0824

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6BOK|1|EB|U|1313
6BOK|1|EB|C|1314
*
6BOK|1|EB|G|1338
6BOK|1|EB|G|1339
6BOK|1|EB|U|1340
6BOK|1|EB|U|1341
6BOK|1|EB|A|1342
6BOK|1|EB|G|1343
*
6BOK|1|EB|C|1404
6BOK|1|EB|U|1405
*
6BOK|1|EB|A|1597
6BOK|1|EB|C|1598
6BOK|1|EB|C|1599
6BOK|1|EB|C|1600
6BOK|1|EB|G|1601
6BOK|1|EB|U|1602
6BOK|1|EB|A|1603

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L34

Chain XB

50S ribosomal protein L23